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Title: A survey of techniques for sequence similarities matching in compression
Authors: Law, NF 
Cheng, KO
Keywords: DNA Sequence Compression
Suffix-based approach
Dynamic programming approach
Seed extension approach
Rule-based approach and parsing approach
Issue Date: 2014
Source: Advances in robotics & automation, 2014, v. 3, no. 1, 118 How to cite?
Journal: Advances in robotics & automation 
Abstract: DNA Sequence Compression can be achieved through exploiting the intra-sequence and inter-sequence similarities. In order to have a good compression gain, effective methods have to be used to search for all the similar subsequences within the DNA sequences so that these similar subsequences can be encoded together. Different pattern recognition methods have been used to search for these similar subsequences. They are suffix-based approach, dynamic programming approach, seed extension approach, rule-based approach and parsing approach. A survey of their main ideas and application domains has been given in this paper.
ISSN: 2168-9695
DOI: 10.4172/2168-9695.1000118
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